Cancer Institute A national cancer institute
designated cancer center

Hanlee P. Ji

Publication Details

  • Improving bioinformatic pipelines for exome variant calling GENOME MEDICINE Ji, H. P. 2012; 4

    Abstract:

    Exome sequencing analysis is a cost-effective approach for identifying variants in coding regions. However, recognizing the relevant single nucleotide variants, small insertions and deletions remains a challenge for many researchers and diagnostic laboratories typically do not have access to the bioinformatic analysis pipelines necessary for clinical application. The Atlas2 suite, recently released by Baylor Genome Center, is designed to be widely accessible, runs on desktop computers but is scalable to computational clusters, and performs comparably with other popular variant callers. Atlas2 may be an accessible alternative for data processing when a rapid solution for variant calling is required.See research article http://www.biomedcentral.com/1471-2105/13/8.

    View details for DOI 10.1186/gm306

    View details for Web of Science ID 000314564600001

    View details for PubMedID 22289516

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