Cancer Institute A national cancer institute
designated cancer center

Atul Butte

Publication Details

  • ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression BIOINFORMATICS Engreitz, J. M., Chen, R., Morgan, A. A., Dudley, J. T., Mallelwar, R., Butte, A. J. 2011; 27 (23): 3317-3318


    We introduce ProfileChaser, a web server that allows for querying the Gene Expression Omnibus based on genome-wide patterns of differential expression. Using a novel, content-based approach, ProfileChaser retrieves expression profiles that match the differentially regulated transcriptional programs in a user-supplied experiment. This analysis identifies statistical links to similar expression experiments from the vast array of publicly available data on diseases, drugs, phenotypes and other experimental conditions.http://profilechaser.stanford.eduabutte@stanford.eduSupplementary data are available at Bioinformatics online.

    View details for DOI 10.1093/bioinformatics/btr548

    View details for Web of Science ID 000297352100015

    View details for PubMedID 21967760

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