Wing Wong

Publications

• A new FACS approach isolates hESC derived endoderm using transcription factors. Pan Y, Ouyang Z, Wong WH, Baker JC. PLoS One. 2011; 6 (3): e17536
• Completely phased genome sequencing through chromosome sorting. Yang H, Chen X, Wong WH. Proc Natl Acad Sci U S A. 2011; 108 (1): 12-7
• Human transcriptome array for high-throughput clinical studies. Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W. Proc Natl Acad Sci U S A. 2011; 108 (9): 3707-12
• An "almost exhaustive" search-based sequential permutation method for detecting epistasis in disease association studies. Ma L, Assimes TL, Asadi NB, Iribarren C, Quertermous T, Wong WH. Genet Epidemiol. 2010; 34 (5): 434-43
• Analysis of factorial time-course microarrays with application to a clinical study of burn injury. Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, Fagan S, Yu YM, Cobb JP, Remick DG, Mannick JA, Lederer JA, Gamelli RL, Silver GM, West MA, Shapiro MB, Smith R, Camp DG, Qian W, Storey J, Mindrinos M, Tibshirani R, Lowry S, Calvano S, Chaudry I, West MA, Cohen M, Moore EE, Johnson J, Moldawer LL, Baker HV, Efron PA, Balis UG, Billiar TR, Ochoa JB, Sperry JL, Miller-Graziano CL, De AK, Bankey PE, Finnerty CC, Jeschke MG, Minei JP, Arnoldo BD, Hunt JL, Horton J, Cobb JP, Brownstein B, Freeman B, Maier RV, Nathens AB, Cuschieri J, Gibran N, Klein M, O'Keefe G. Proc Natl Acad Sci U S A. 2010; 107 (22): 9923-8
• CisGenome Browser: a flexible tool for genomic data visualization. Jiang H, Wang F, Dyer NP, Wong WH. Bioinformatics. 2010; 26 (14): 1781-2
• Deep phenotyping to predict live birth outcomes in in vitro fertilization. Banerjee P, Choi B, Shahine LK, Jun SH, O'Leary K, Lathi RB, Westphal LM, Wong WH, Yao MW. Proc Natl Acad Sci U S A. 2010; 107 (31): 13570-5
• Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Au KF, Jiang H, Lin L, Xing Y, Wong WH. Nucleic Acids Res. 2010; 38 (14): 4570-8
• Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP. Proc Natl Acad Sci U S A. 2010; 107 (21): 9736-41
• Modeling non-uniformity in short-read rates in RNA-Seq data. Li J, Jiang H, Wong WH. Genome Biol. 2010; 11 (5): R50
• ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. Ouyang Z, Zhou Q, Wong WH. Proc Natl Acad Sci U S A. 2009; 106 (51): 21521-6
• Identifiability of isoform deconvolution from junction arrays and RNA-Seq. Hiller D, Jiang H, Xu W, Wong WH. Bioinformatics. 2009; 25 (23): 3056-9
• Cross-hybridization modeling on Affymetrix exon arrays. Kapur K, Jiang H, Xing Y, Wong WH. Bioinformatics. 2008; 24 (24): 2887-93
• Defining human embryo phenotypes by cohort-specific prognostic factors. Jun SH, Choi B, Shahine L, Westphal LM, Behr B, Reijo Pera RA, Wong WH, Yao MW. PLoS One. 2008; 3 (7): e2562
• Isolation and transcriptional profiling of purified hepatic cells derived from human embryonic stem cells. Chiao E, Elazar M, Xing Y, Xiong A, Kmet M, Millan MT, Glenn JS, Wong WH, Baker J. Stem Cells. 2008; 26 (8): 2032-41
• SeqMap: mapping massive amount of oligonucleotides to the genome. Jiang H, Wong WH. Bioinformatics. 2008; 24 (20): 2395-6
• Exon arrays provide accurate assessments of gene expression. Kapur K, Xing Y, Ouyang Z, Wong WH. Genome Biol. 2007; 8 (5): R82
• Probe selection and expression index computation of Affymetrix Exon Arrays. Xing Y, Kapur K, Wong WH. PLoS One. 2006: 1 e88
• De novo discovery of a tissue-specific gene regulatory module in a chordate. Johnson DS, Zhou Q, Yagi K, Satoh N, Wong W, Sidow A. Genome Res. 2005; 15 (10): 1315-24
• GeneNotes--a novel information management software for biologists. Hong P, Wong WH. BMC Bioinformatics. 2005: 6 20
• Reliable prediction of transcription factor binding sites by phylogenetic verification. Li X, Zhong S, Wong WH. Proc Natl Acad Sci U S A. 2005; 102 (47): 16945-50
• Sampling motifs on phylogenetic trees. Li X, Wong WH. Proc Natl Acad Sci U S A. 2005; 102 (27): 9481-6
• GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space. Zhong S, Storch KF, Lipan O, Kao MC, Weitz CJ, Wong WH. Appl Bioinformatics. 2004; 3 (4): 261-4