Trevor Hastie

Publications

• Elements of Statistical Learning: datamining, inference, and prediction (second edition) T. Hastie, R. Tibshirani, J. Friedman. Springer. 2009
• Generalized Additive Models Hastie TJ, Chapman and Hall (with R. Tibshirani). --. 1990
• Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts. Cross DS, McCarty CA, Hytopoulos E, Beggs M, Nolan N, Harrington DS, Hastie T, Tibshirani R, Tracy RP, Psaty BM, McClelland R, Tsao PS, Quertermous T. Curr Med Res Opin. 2012; 28 (11): 1819-30
• No increased mortality with early aortic aneurysm disease. Mell M, White JJ, Hill BB, Hastie T, Dalman RL. J Vasc Surg. 2012; 56 (5): 1246-51
• A fused lasso latent feature model for analyzing multi-sample aCGH data. Nowak G, Hastie T, Pollack JR, Tibshirani R. Biostatistics. 2011; 12 (4): 776-91
• Cell type-specific gene expression differences in complex tissues. Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Nat Methods. 2010; 7 (4): 287-9
• Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling. Beck AH, Lee CH, Witten DM, Gleason BC, Edris B, Espinosa I, Zhu S, Li R, Montgomery KD, Marinelli RJ, Tibshirani R, Hastie T, Jablons DM, Rubin BP, Fletcher CD, West RB, van de Rijn M. Oncogene. 2010; 29 (6): 845-54
• Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets. Suthram S, Dudley JT, Chiang AP, Chen R, Hastie TJ, Butte AJ. PLoS Comput Biol. 2010; 6 (2): e1000662
• Regularization Paths for Generalized Linear Models via Coordinate Descent. Friedman J, Hastie T, Tibshirani R. J Stat Softw. 2010; 33 (1): 1-22
• Spectral Regularization Algorithms for Learning Large Incomplete Matrices. Mazumder R, Hastie T, Tibshirani R. J Mach Learn Res. 2010: 11 2287-2322
• A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Witten DM, Tibshirani R, Hastie T. Biostatistics. 2009; 10 (3): 515-34
• Genome-wide association analysis by lasso penalized logistic regression. Wu TT, Chen YF, Hastie T, Sobel E, Lange K. Bioinformatics. 2009; 25 (6): 714-21
• Presence-only data and the em algorithm. Ward G, Hastie T, Barry S, Elith J, Leathwick JR. Biometrics. 2009; 65 (2): 554-63
• A working guide to boosted regression trees. Elith J, Leathwick JR, Hastie T. J Anim Ecol. 2008; 77 (4): 802-13
• Combining biological gene expression signatures in predicting outcome in breast cancer: An alternative to supervised classification. Nuyten DS, Hastie T, Chi JT, Chang HY, van de Vijver MJ. Eur J Cancer. 2008; 44 (15): 2319-29
• New cutpoints to identify increased HER2 copy number: analysis of a large, population-based cohort with long-term follow-up. Jensen KC, Turbin DA, Leung S, Miller MA, Johnson K, Norris B, Hastie T, McKinney S, Nielsen TO, Huntsman DG, Gilks CB, West RB. Breast Cancer Res Treat. 2008; 112 (3): 453-9
• Penalized logistic regression for detecting gene interactions. Park MY, Hastie T. Biostatistics. 2008; 9 (1): 30-50
• Radiation-induced gene expression in human subcutaneous fibroblasts is predictive of radiation-induced fibrosis. Rødningen OK, Børresen-Dale AL, Alsner J, Hastie T, Overgaard J. Radiother Oncol. 2008; 86 (3): 314-20
• Risk estimation of distant metastasis in node-negative, estrogen receptor-positive breast cancer patients using an RT-PCR based prognostic expression signature. Tutt A, Wang A, Rowland C, Gillett C, Lau K, Chew K, Dai H, Kwok S, Ryder K, Shu H, Springall R, Cane P, McCallie B, Kam-Morgan L, Anderson S, Buerger H, Gray J, Bennington J, Esserman L, Hastie T, Broder S, Sninsky J, Brandt B, Waldman F. BMC Cancer. 2008: 8 339
• Sparse inverse covariance estimation with the graphical lasso. Friedman J, Hastie T, Tibshirani R. Biostatistics. 2008; 9 (3): 432-41
• Averaged gene expressions for regression. Park MY, Hastie T, Tibshirani R. Biostatistics. 2007; 8 (2): 212-27
• Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer. Buess M, Nuyten DS, Hastie T, Nielsen T, Pesich R, Brown PO. Genome Biol. 2007; 8 (9): R191
• Does cancer risk affect health-related quality of life in patients with Barrett's esophagus? Gerson LB, Ullah N, Hastie T, Goldstein MK. Gastrointest Endosc. 2007; 65 (1): 16-25
• Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers. Chi JT, Rodriguez EH, Wang Z, Nuyten DS, Mukherjee S, van de Rijn M, van de Vijver MJ, Hastie T, Brown PO. PLoS Genet. 2007; 3 (9): 1770-84
• Outlier sums for differential gene expression analysis. Tibshirani R, Hastie T. Biostatistics. 2007; 8 (1): 2-8
• Regularized linear discriminant analysis and its application in microarrays. Guo Y, Hastie T, Tibshirani R. Biostatistics. 2007; 8 (1): 86-100
• Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers. Chi JT, Wang Z, Nuyten DS, Rodriguez EH, Schaner ME, Salim A, Wang Y, Kristensen GB, Helland A, Børresen-Dale AL, Giaccia A, Longaker MT, Hastie T, Yang GP, van de Vijver MJ, Brown PO. PLoS Med. 2006; 3 (3): e47
• Microarray analysis of the transcriptional response to single or multiple doses of ionizing radiation in human subcutaneous fibroblasts. Rødningen OK, Overgaard J, Alsner J, Hastie T, Børresen-Dale AL. Radiother Oncol. 2005; 77 (3): 231-40
• Patient-derived health state utilities for gastroesophageal reflux disease. Gerson LB, Ullah N, Hastie T, Triadafilopoulos G, Goldstein M. Am J Gastroenterol. 2005; 100 (3): 524-33
• Quantitative measurements of alternating finger tapping in Parkinson's disease correlate with UPDRS motor disability and reveal the improvement in fine motor control from medication and deep brain stimulation. Taylor Tavares AL, Jefferis GS, Koop M, Hill BC, Hastie T, Heit G, Bronte-Stewart HM. Mov Disord. 2005; 20 (10): 1286-98
• Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sørlie T, Dai H, He YD, van't Veer LJ, Bartelink H, van de Rijn M, Brown PO, van de Vijver MJ. Proc Natl Acad Sci U S A. 2005; 102 (10): 3738-43
• Classification of gene microarrays by penalized logistic regression. Zhu J, Hastie T. Biostatistics. 2004; 5 (3): 427-43
• Efficient quadratic regularization for expression arrays. Hastie T, Tibshirani R. Biostatistics. 2004; 5 (3): 329-40
• Microelectrode recording revealing a somatotopic body map in the subthalamic nucleus in humans with Parkinson disease. Romanelli P, Heit G, Hill BC, Kraus A, Hastie T, Brontë-Stewart HM. J Neurosurg. 2004; 100 (4): 611-8
• Mitral annular size predicts Alfieri stitch tension in mitral edge-to-edge repair. Timek TA, Nielsen SL, Lai DT, Tibayan F, Liang D, Daughters GT, Beineke P, Hastie T, Ingels NB, Miller DC. J Heart Valve Dis. 2004; 13 (2): 165-73
• Sample classification from protein mass spectrometry, by 'peak probability contrasts'. Tibshirani R, Hastie T, Narasimhan B, Soltys S, Shi G, Koong A, Le QT. Bioinformatics. 2004; 20 (17): 3034-44
• Gene expression patterns in ovarian carcinomas. Schaner ME, Ross DT, Ciaravino G, Sorlie T, Troyanskaya O, Diehn M, Wang YC, Duran GE, Sikic TL, Caldeira S, Skomedal H, Tu IP, Hernandez-Boussard T, Johnson SW, O'Dwyer PJ, Fero MJ, Kristensen GB, Borresen-Dale AL, Hastie T, Tibshirani R, van de Rijn M, Teng NN, Longacre TA, Botstein D, Brown PO, Sikic BI. Mol Biol Cell. 2003; 14 (11): 4376-86
• Ischemia in three left ventricular regions: Insights into the pathogenesis of acute ischemic mitral regurgitation. Timek TA, Lai DT, Tibayan F, Liang D, Daughters GT, Dagum P, Zasio MK, Lo S, Hastie T, Ingels NB, Miller DC. J Thorac Cardiovasc Surg. 2003; 125 (3): 559-69
• Note on "Comparison of model selection for regression" by Vladimir Cherkassky and Yunqian Ma. Hastie T, Tibshirani R, Friedman J. Neural Comput. 2003; 15 (7): 1477-80
• Post-transplantation lymphoproliferative disease in heart and heart-lung transplant recipients: 30-year experience at Stanford University. Gao SZ, Chaparro SV, Perlroth M, Montoya JG, Miller JL, DiMiceli S, Hastie T, Oyer PE, Schroeder J. J Heart Lung Transplant. 2003; 22 (5): 505-14
• Repeated observation of breast tumor subtypes in independent gene expression data sets. Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale AL, Botstein D. Proc Natl Acad Sci U S A. 2003; 100 (14): 8418-23
• Cortisol and behavior in fragile X syndrome. Hessl D, Glaser B, Dyer-Friedman J, Blasey C, Hastie T, Gunnar M, Reiss AL. Psychoneuroendocrinology. 2002; 27 (7): 855-72
• Diagnosis of multiple cancer types by shrunken centroids of gene expression. Tibshirani R, Hastie T, Narasimhan B, Chu G. Proc Natl Acad Sci U S A. 2002; 99 (10): 6567-72
• Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis. Zhao H, Hastie T, Whitfield ML, Børresen-Dale AL, Jeffrey SS. BMC Genomics. 2002; 3 (1): 31
• Risk factors for progressive cartilage loss in the knee: a longitudinal magnetic resonance imaging study in forty-three patients. Biswal S, Hastie T, Andriacchi TP, Bergman GA, Dillingham MF, Lang P. Arthritis Rheum. 2002; 46 (11): 2884-92
• Brain anatomy, gender and IQ in children and adolescents with fragile X syndrome. Eliez S, Blasey CM, Freund LS, Hastie T, Reiss AL. Brain. 2001; 124 (Pt 8): 1610-8
• Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Sørlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Lønning PE, Børresen-Dale AL. Proc Natl Acad Sci U S A. 2001; 98 (19): 10869-74
• Missing value estimation methods for DNA microarrays. Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, Botstein D, Altman RB. Bioinformatics. 2001; 17 (6): 520-5
• Posttransplantation lymphoproliferative disease in heart and heart-lung transplant recipients: thirty years experience at our hospital. Chaparro S, Gao S, Perlroth M, Montoya J, Hastie T, Miller JL, Oyer PE, Schroeder J. J Heart Lung Transplant. 2001; 20 (2): 258
• Supervised harvesting of expression trees. Hastie T, Tibshirani R, Botstein D, Brown P. Genome Biol. 2001; 2 (1): RESEARCH0003
• 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, Brown P. Genome Biol. 2000; 1 (2): RESEARCH0003
• Prediction of risk for patients with unstable angina. Heidenreich PA, Go A, Melsop KA, Alloggiamento T, McDonald KM, Hagan V, Hastie T, Hlatky MA. Evid Rep Technol Assess (Summ). 2000; (31): 1-3
• An evaluation of beta-blockers, calcium antagonists, nitrates, and alternative therapies for stable angina. Heidenreich PA, McDonald KM, Hastie T, Fadel B, Hagan V, Lee BK, Hlatky MA. Evid Rep Technol Assess (Summ). 1999; (10): 1-2
• Bone mineral acquisition in healthy Asian, Hispanic, black, and Caucasian youth: a longitudinal study. Bachrach LK, Hastie T, Wang MC, Narasimhan B, Marcus R. J Clin Endocrinol Metab. 1999; 84 (12): 4702-12
• Meta-analysis of trials comparing beta-blockers, calcium antagonists, and nitrates for stable angina. Heidenreich PA, McDonald KM, Hastie T, Fadel B, Hagan V, Lee BK, Hlatky MA. JAMA. 1999; 281 (20): 1927-36
• Modeling and superposition of multiple protein structures using affine transformations: analysis of the globins. Wu TD, Schmidler SC, Hastie T, Brutlag DL. Pac Symp Biocomput. 1998: 509-20
• Regression analysis of multiple protein structures. Wu TD, Schmidler SC, Hastie T, Brutlag DL. J Comput Biol. 1998; 5 (3): 585-95
• Generalized additive models for medical research. Hastie T, Tibshirani R. Stat Methods Med Res. 1995; 4 (3): 187-96
• Flexible covariate effects in the proportional hazards model. Hastie T, Sleeper L, Tibshirani R. Breast Cancer Res Treat. 1992; 22 (3): 241-50
• An analysis of gestational age, neonatal size and neonatal death using nonparametric logistic regression. Herman AA, Hastie TJ. J Clin Epidemiol. 1990; 43 (11): 1179-90
• Exploring the nature of covariate effects in the proportional hazards model. Hastie T, Tibshirani R. Biometrics. 1990; 46 (4): 1005-16
• Regression with an ordered categorical response. Hastie TJ, Botha JL, Schnitzler CM. Stat Med. 1989; 8 (7): 785-94
• Closed mitral valvotomy: actuarial analysis of results in 654 patients over 12 years and analysis of preoperative predictors of long-term survival. Commerford PJ, Hastie T, Beck W. Ann Thorac Surg. 1982; 33 (5): 473-9
• Risk of asbestosis in crocidolite and amosite mines in South Africa. Irwig LM, du Toit RS, Sluis-Cremer GK, Solomon A, Thomas RG, Hamel PP, Webster I, Hastie T. Ann N Y Acad Sci. 1979: 330 35-52
• [Survey of antibiotic resistance in gram-negative bacteria using the cross product ratio]. Arndt BW, Hastie TJ, Botha P. Zentralbl Bakteriol Orig A. 1979; 243 (4): 483-9