Stephen J Smith

Publications

• Automated analysis of a diverse synapse population. Busse B, Smith S. PLoS Comput Biol. 2013; 9 (3): e1002976
• Astrocyte glypicans 4 and 6 promote formation of excitatory synapses via GluA1 AMPA receptors. Allen NJ, Bennett ML, Foo LC, Wang GX, Chakraborty C, Smith SJ, Barres BA. Nature. 2012; 486 (7403): 410-4
• Deep molecular diversity of mammalian synapses: why it matters and how to measure it. O'Rourke NA, Weiler NC, Micheva KD, Smith SJ. Nat Rev Neurosci. 2012; 13 (6): 365-79
• High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy. Tapia JC, Kasthuri N, Hayworth KJ, Schalek R, Lichtman JW, Smith SJ, Buchanan J. Nat Protoc. 2012; 7 (2): 193-206
• Sub-diffraction limit localization of proteins in volumetric space using Bayesian restoration of fluorescence images from ultrathin specimens. Wang G, Smith SJ. PLoS Comput Biol. 2012; 8 (8): e1002671
• Three-dimensional microstructural changes in murine abdominal aortic aneurysms quantified using immunofluorescent array tomography. Saatchi S, Azuma J, Wanchoo N, Smith SJ, Yock PG, Taylor CA, Tsao PS. J Histochem Cytochem. 2012; 60 (2): 97-109
• Bidirectional regulation of dendritic voltage-gated potassium channels by the fragile X mental retardation protein. Lee HY, Ge WP, Huang W, He Y, Wang GX, Rowson-Baldwin A, Smith SJ, Jan YN, Jan LY. Neuron. 2011; 72 (4): 630-42
• Large-scale automated histology in the pursuit of connectomes. Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, Smith SJ, Takemura S, Tsai PS, Sakmann B. J Neurosci. 2011; 31 (45): 16125-38
• Circadian and homeostatic regulation of structural synaptic plasticity in hypocretin neurons. Appelbaum L, Wang G, Yokogawa T, Skariah GM, Smith SJ, Mourrain P, Mignot E. Neuron. 2010; 68 (1): 87-98
• Single-synapse analysis of a diverse synapse population: proteomic imaging methods and markers. Micheva KD, Busse B, Weiler NC, O'Rourke N, Smith SJ. Neuron. 2010; 68 (4): 639-53
• Visualizing the distribution of synapses from individual neurons in the mouse brain. Li L, Tasic B, Micheva KD, Ivanov VM, Spletter ML, Smith SJ, Luo L. PLoS One. 2010; 5 (7): e11503
• Classical MHCI molecules regulate retinogeniculate refinement and limit ocular dominance plasticity. Datwani A, McConnell MJ, Kanold PO, Micheva KD, Busse B, Shamloo M, Smith SJ, Shatz CJ. Neuron. 2009; 64 (4): 463-70
• Gabapentin receptor alpha2delta-1 is a neuronal thrombospondin receptor responsible for excitatory CNS synaptogenesis. Eroglu C, Allen NJ, Susman MW, O'Rourke NA, Park CY, Ozkan E, Chakraborty C, Mulinyawe SB, Annis DS, Huberman AD, Green EM, Lawler J, Dolmetsch R, Garcia KC, Smith SJ, Luo ZD, Rosenthal A, Mosher DF, Barres BA. Cell. 2009; 139 (2): 380-92
• Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish. Appelbaum L, Wang GX, Maro GS, Mori R, Tovin A, Marin W, Yokogawa T, Kawakami K, Smith SJ, Gothilf Y, Mignot E, Mourrain P. Proc Natl Acad Sci U S A. 2009; 106 (51): 21942-7
• Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits. Micheva KD, Smith SJ. Neuron. 2007; 55 (1): 25-36
• Circuit reconstruction tools today. Smith SJ, Curr Opin Neurobiol. 2007; 17 (5): 601-8
• Integrated semiconductor optical sensors for cellular and neural imaging. Levi O, Lee TT, Lee MM, Smith SJ, Harris JS. Appl Opt. 2007; 46 (10): 1881-9
• The classical complement cascade mediates CNS synapse elimination. Stevens B, Allen NJ, Vazquez LE, Howell GR, Christopherson KS, Nouri N, Micheva KD, Mehalow AK, Huberman AD, Stafford B, Sher A, Litke AM, Lambris JD, Smith SJ, John SW, Barres BA. Cell. 2007; 131 (6): 1164-78
• Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. Meyer MP, Smith SJ. J Neurosci. 2006; 26 (13): 3604-14
• Integrated semiconductor optical sensors for chronic, minimally-invasive imaging of brain function. Lee TT, Levi O, Cang J, Kaneko M, Stryker MP, Smith SJ, Shenoy KV, Harris JS. Conf Proc IEEE Eng Med Biol Soc. 2006: 1 1025-8
• Pregabalin reduces the release of synaptic vesicles from cultured hippocampal neurons. Micheva KD, Taylor CP, Smith SJ. Mol Pharmacol. 2006; 70 (2): 467-76
• Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors. Okumoto S, Looger LL, Micheva KD, Reimer RJ, Smith SJ, Frommer WB. Proc Natl Acad Sci U S A. 2005; 102 (24): 8740-5
• Functional imaging reveals rapid development of visual response properties in the zebrafish tectum. Niell CM, Smith SJ. Neuron. 2005; 45 (6): 941-51
• Regulation of axon growth in vivo by activity-based competition. Hua JY, Smear MC, Baier H, Smith SJ. Nature. 2005; 434 (7036): 1022-6
• Strong effects of subphysiological temperature on the function and plasticity of mammalian presynaptic terminals. Micheva KD, Smith SJ. J Neurosci. 2005; 25 (33): 7481-8
• Greater than 10(6) optical isolation in integrated optoelectronic fluorescence sensor. Thrush E, Levi O, Cook L, Smith S, Harris J. Conf Proc IEEE Eng Med Biol Soc. 2004: 3 2080-1
• Optical detection of a quantal presynaptic membrane turnover. Ryan TA, Reuter H, Smith SJ. Nature. 1997; 388 (6641): 478-82
• Evidence for a role of dendritic filopodia in synaptogenesis and spine formation. Ziv NE, Smith SJ. Neuron. 1996; 17 (1): 91-102
• Potentiation of evoked vesicle turnover at individually resolved synaptic boutons. Ryan TA, Ziv NE, Smith SJ. Neuron. 1996; 17 (1): 125-34
• Quantitative analysis of cadherin-catenin-actin reorganization during development of cell-cell adhesion. Adams CL, Nelson WJ, Smith SJ. J Cell Biol. 1996; 135 (6 Pt 2): 1899-911
• The dynamics of dendritic structure in developing hippocampal slices. Dailey ME, Smith SJ. J Neurosci. 1996; 16 (9): 2983-94
• The kinetics of synaptic vesicle recycling measured at single presynaptic boutons. Ryan TA, Reuter H, Wendland B, Schweizer FE, Tsien RW, Smith SJ. Neuron. 1993; 11 (4): 713-24