Joshua Elias
Publications
- A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers. Nature. 2011; (7350): 230-4
- The dynamic state of protein turnover: It's about time. Trends Cell Biol. 2011; (5): 293-303
- The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries. Cell Host Microbe. 2011; (4): 410-9
- A tissue-specific atlas of mouse protein phosphorylation and expression. Cell. 2010; (7): 1174-89
- Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods. 2007; (3): 207-14
- Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat Methods. 2005; (9): 667-75
- A role for the MRN complex in ATR activation via TOPBP1 recruitment. Mol Cell. 2013; (1): 116-22
- Target-decoy search strategy for mass spectrometry-based proteomics. Methods Mol Biol. 2010: 55-71
- Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen. Nature. 2010; (7279): 374-8
- Identification of beta-secretase (BACE1) substrates using quantitative proteomics. PLoS One. 2009; (12): e8477
- Proteomic profiling of gamma-secretase substrates and mapping of substrate requirements. PLoS Biol. 2008; (10): e257
- The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses. J Proteome Res. 2008; (11): 4756-65
- Assessing enzyme activities using stable isotope labeling and mass spectrometry. Mol Cell Proteomics. 2007; (10): 1771-7
- Catch-and-release reagents for broadscale quantitative proteomics analyses. J Proteome Res. 2007; (4): 1482-91
- Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. J Proteome Res. 2007; (3): 1190-7
- Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation. J Proteome Res. 2006; (5): 1224-31
- Optimization and use of peptide mass measurement accuracy in shotgun proteomics. Mol Cell Proteomics. 2006; (7): 1326-37
- Characterization of mouse spleen cells by subtractive proteomics. Mol Cell Proteomics. 2005; (10): 1459-70
- The Parkinson's disease-associated DJ-1 protein is a transcriptional co-activator that protects against neuronal apoptosis. Hum Mol Genet. 2005; (9): 1231-41
- BRCA1-dependent ubiquitination of gamma-tubulin regulates centrosome number. Mol Cell Biol. 2004; (19): 8457-66
- Intensity-based protein identification by machine learning from a library of tandem mass spectra. Nat Biotechnol. 2004; (2): 214-9
- Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci U S A. 2004; (33): 12130-5
- SILVER helps assign peptides to tandem mass spectra using intensity-based scoring. J Am Soc Mass Spectrom. 2004; (6): 910-2
- Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res. 2003 Jan-Feb; (1): 43-50
- A proteomics approach to understanding protein ubiquitination. Nat Biotechnol. 2003; (8): 921-6

